Package | Description |
---|---|
de.jstacs.data.sequences.annotation |
Provides the facilities to annotate
Sequence s using a number of pre-defined annotation types, or additional
implementations of the SequenceAnnotation class. |
de.jstacs.motifDiscovery |
This package provides the framework including the interface for any de novo motif discoverer.
|
Constructor and Description |
---|
CisRegulatoryModuleAnnotation(String identifier,
MotifAnnotation[] motifs,
Result... additionalAnnotation)
Creates a new
CisRegulatoryModuleAnnotation from a set of motifs
and possibly additional annotations. |
Modifier and Type | Method and Description |
---|---|
MotifAnnotation[] |
SignificantMotifOccurrencesFinder.findSignificantMotifOccurrences(int motif,
Sequence seq,
int start)
This method finds the significant motif occurrences in the sequence.
|
MotifAnnotation[] |
SignificantMotifOccurrencesFinder.findSignificantMotifOccurrences(int motif,
Sequence seq,
int addMax,
int start)
This method finds the significant motif occurrences in the sequence.
|