Uses of Class
de.jstacs.io.AbstractStringExtractor

Packages that use AbstractStringExtractor

Package	Description
de.jstacs.data	Provides classes for the representation of data. The base classes to represent data are Alphabet and AlphabetContainer for representing alphabets, Sequence and its sub-classes to represent continuous and discrete sequences, and DataSet to represent data sets comprising a set of sequences.
de.jstacs.data.sequences	Provides classes for representing sequences. The implementations of sequences currently include DiscreteSequences prepared for alphabets of different sizes, and ArbitrarySequences that may contain continuous values as well. As sub-package provides the facilities to annotate Sequences.
de.jstacs.io	Provides classes for reading data from and writing to a file and storing a number of datatypes, including all primitives, arrays of primitives, and Storables to an XML-representation.

Uses of AbstractStringExtractor in de.jstacs.data

Constructors in de.jstacs.data with parameters of type AbstractStringExtractor

Constructor and Description
DataSet(AlphabetContainer abc, AbstractStringExtractor se) Creates a new DataSet from a StringExtractor using the given AlphabetContainer.
DataSet(AlphabetContainer abc, AbstractStringExtractor se, int subsequenceLength) Creates a new DataSet from a StringExtractor using the given AlphabetContainer and all overlapping windows of length subsequenceLength.
DataSet(AlphabetContainer abc, AbstractStringExtractor se, String delim) Creates a new DataSet from a StringExtractor using the given AlphabetContainer and a delimiter delim.
DataSet(AlphabetContainer abc, AbstractStringExtractor se, String delim, int subsequenceLength) Creates a new DataSet from a StringExtractor using the given AlphabetContainer, the given delimiter delim and all overlapping windows of length subsequenceLength.
DataSet(AlphabetContainer abc, AbstractStringExtractor se, String delim, int subsequenceLength, double percentage) Creates a new DataSet from a StringExtractor using the given AlphabetContainer, the given delimiter delim and all overlapping windows of length subsequenceLength.

Uses of AbstractStringExtractor in de.jstacs.data.sequences

Methods in de.jstacs.data.sequences with parameters of type AbstractStringExtractor

Modifier and Type	Method and Description
static DataSet	SparseSequence.getDataSet(AlphabetContainer con, AbstractStringExtractor... se) This method allows to create a DataSet containing SparseSequences.
static DataSet	ArbitraryFloatSequence.getDataSet(AlphabetContainer con, AbstractStringExtractor... se) This method allows to create a DataSet containing ArbitraryFloatSequences.

Uses of AbstractStringExtractor in de.jstacs.io

Subclasses of AbstractStringExtractor in de.jstacs.io

Modifier and Type	Class and Description
class	InfixStringExtractor This class implements an AbstractStringExtractor that can be seen as a filter.
class	LimitedStringExtractor This AbstractStringExtractor allows to read only a limited amount of data.
class	SimpleStringExtractor This is a simple class that extracts Strings.
class	SparseStringExtractor This StringExtractor reads the Strings from a File as the user asks for the String.
class	StringExtractor This class implements the reader that extracts Strings from either a File or a String.

Constructors in de.jstacs.io with parameters of type AbstractStringExtractor

Constructor and Description
InfixStringExtractor(AbstractStringExtractor se, int start, int length) This constructor creates an instance that uses only a infix of the string returned by se.
LimitedStringExtractor(AbstractStringExtractor se, int num) This constructor creates a new instance based on a given AbstractStringExtractor and a maximal number of Strings to be read.