Uses of Interface
de.jstacs.motifDiscovery.Mutable

Packages that use Mutable

Package	Description
de.jstacs.sequenceScores.statisticalModels.differentiable	Provides all DifferentiableStatisticalModels, which can compute the gradient with respect to their parameters for a given input Sequence.
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels	Provides DifferentiableStatisticalModels that are directed graphical models.
de.jstacs.sequenceScores.statisticalModels.differentiable.localMixture
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture	Provides DifferentiableSequenceScores that are mixtures of other DifferentiableSequenceScores.

Uses of Mutable in de.jstacs.sequenceScores.statisticalModels.differentiable

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable that implement Mutable

Modifier and Type	Class and Description
class	MappingDiffSM This class implements a DifferentiableStatisticalModel that works on mapped Sequences.
class	MarkovRandomFieldDiffSM This class implements the scoring function for any MRF (Markov Random Field).
class	NormalizedDiffSM This class makes an unnormalized DifferentiableStatisticalModel to a normalized DifferentiableStatisticalModel.

Uses of Mutable in de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels that implement Mutable

Modifier and Type	Class and Description
class	MarkovModelDiffSM This class implements a AbstractDifferentiableStatisticalModel for an inhomogeneous Markov model.

Uses of Mutable in de.jstacs.sequenceScores.statisticalModels.differentiable.localMixture

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable.localMixture that implement Mutable

Modifier and Type	Class and Description
class	LimitedSparseLocalInhomogeneousMixtureDiffSM_higherOrder Class for a sparse local inhomogeneous mixture (Slim) model.

Uses of Mutable in de.jstacs.sequenceScores.statisticalModels.differentiable.mixture

Classes in de.jstacs.sequenceScores.statisticalModels.differentiable.mixture that implement Mutable

Modifier and Type	Class and Description
class	StrandDiffSM This class enables the user to search on both strand.