Package | Description |
---|---|
de.jstacs.parameters |
This package provides classes for parameters that establish a general convention for the description of parameters
as defined in the
Parameter -interface. |
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels.structureLearning.measures.btMeasures |
Provides the facilities to learn the structure of a
BayesianNetworkDiffSM as
a Bayesian tree using a number of measures to define a rating of structures. |
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels.structureLearning.measures.pmmMeasures |
Provides the facilities to learn the structure of a
BayesianNetworkDiffSM as
a permuted Markov model using a number of measures to define a rating of structures. |
de.jstacs.tools | |
de.jstacs.tools.ui.galaxy |
Modifier and Type | Method and Description |
---|---|
protected void |
AbstractSelectionParameter.createParameterSet(Object[] values,
String[] keys,
String[] comments)
Creates a new
ParameterSet from an array of values, an array of
names and an array of comments. |
Constructor and Description |
---|
AbstractSelectionParameter(DataType datatype,
String[] keys,
Object[] values,
String[] comments,
String name,
String comment,
boolean required)
Constructor for a
AbstractSelectionParameter . |
AbstractSelectionParameter(DataType datatype,
String[] keys,
Object[] values,
String name,
String comment,
boolean required)
Constructor for a
AbstractSelectionParameter of SimpleParameter s. |
MultiSelectionParameter(DataType datatype,
String[] keys,
Object[] values,
String[] comments,
String name,
String comment,
boolean required)
Constructor for a
MultiSelectionParameter . |
MultiSelectionParameter(DataType datatype,
String[] keys,
Object[] values,
String name,
String comment,
boolean required)
Constructor for a
MultiSelectionParameter . |
SelectionParameter(DataType datatype,
String[] keys,
Object[] values,
String[] comments,
String name,
String comment,
boolean required)
Constructor for a
SelectionParameter . |
SelectionParameter(DataType datatype,
String[] keys,
Object[] values,
String name,
String comment,
boolean required)
Constructor for a
SelectionParameter . |
SimpleParameter(DataType datatype,
String name,
String comment,
boolean required)
Constructor for a
SimpleParameter without
ParameterValidator . |
SimpleParameter(DataType datatype,
String name,
String comment,
boolean required,
Object defaultVal)
Constructor for a
SimpleParameter without
ParameterValidator but with a default value. |
SimpleParameter(DataType datatype,
String name,
String comment,
boolean required,
ParameterValidator validator)
Constructor for a
SimpleParameter with a
ParameterValidator . |
Constructor and Description |
---|
BTExplainingAwayResidualParameterSet()
Creates a new
BTExplainingAwayResidual.BTExplainingAwayResidualParameterSet with empty
parameter values. |
Constructor and Description |
---|
PMMExplainingAwayResidualParameterSet()
Creates a new
PMMExplainingAwayResidual.PMMExplainingAwayResidualParameterSet with
empty parameter values. |
Constructor and Description |
---|
DataColumnParameter(String dataRef,
String name,
String comment,
boolean required)
Creates a new
DataColumnParameter with given name, comment, and reference. |
DataColumnParameter(String dataRef,
String name,
String comment,
boolean required,
Integer defaultVal)
Creates a new
DataColumnParameter with given name, comment, and reference. |
DataColumnParameter(String dataRef,
String name,
String comment,
boolean required,
ParameterValidator validator)
Creates a new
DataColumnParameter with given name, comment, and reference. |
Constructor and Description |
---|
MultilineSimpleParameter(String name,
String comment,
boolean required)
Creates a new
MultilineSimpleParameter with no default value. |
MultilineSimpleParameter(String name,
String comment,
boolean required,
Object defaultVal)
Creates a new
MultilineSimpleParameter with given default value. |
MultilineSimpleParameter(String name,
String comment,
boolean required,
ParameterValidator validator)
Creates a new
MultilineSimpleParameter with no default value and a ParameterValidator . |