Uses of Interface
de.jstacs.sampling.SamplingFromStatistic

Packages that use SamplingFromStatistic

Package	Description
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states	The package provides all interfaces and classes for states used in hidden Markov models.
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions	The package provides all interfaces and classes for transitions used in hidden Markov models.

Uses of SamplingFromStatistic in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states

Subinterfaces of SamplingFromStatistic in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states

Modifier and Type	Interface and Description
interface	SamplingState

Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states that implement SamplingFromStatistic

Modifier and Type	Class and Description
class	SimpleSamplingState This class implements a state that can be used for a HMM that obtains its parameters from sampling.

Uses of SamplingFromStatistic in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions

Subinterfaces of SamplingFromStatistic in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions

Modifier and Type	Interface and Description
interface	SamplingEmission

Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions that implement SamplingFromStatistic

Modifier and Type	Class and Description
class	SilentEmission This class implements a silent emission which is used to create silent states.

Uses of SamplingFromStatistic in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete

Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete that implement SamplingFromStatistic

Modifier and Type	Class and Description
class	AbstractConditionalDiscreteEmission The abstract super class of discrete emissions.
class	DiscreteEmission This class implements a simple discrete emission without any condition.
class	PhyloDiscreteEmission Phylogenetic discrete emission This class uses a phylogenetic tree to describe multidimensional data It implements Felsensteins model for nucleotide substitution (F81)
class	ReferenceSequenceDiscreteEmission This class implements a discrete emission that depends on some ReferenceSequenceAnnotation at a certain reference position.

Uses of SamplingFromStatistic in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions

Subinterfaces of SamplingFromStatistic in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions

Modifier and Type	Interface and Description
interface	SamplingTransition This interface declares all method used during a sampling.

Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions that implement SamplingFromStatistic

Modifier and Type	Class and Description
class	HigherOrderTransition This class can be used in any AbstractHMM allowing to use gradient based or sampling training algorithm.