Package | Description |
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de.jstacs.sequenceScores.statisticalModels.trainable.discrete | |
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous |
This package contains various inhomogeneous models.
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de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.parameters |
Modifier and Type | Method and Description |
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static ConstraintManager.Decomposition |
ConstraintManager.Decomposition.valueOf(String name)
Returns the enum constant of this type with the specified name.
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static ConstraintManager.Decomposition[] |
ConstraintManager.Decomposition.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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Modifier and Type | Method and Description |
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static MEM[] |
ConstraintManager.disconnect(AbstractList<int[]> list,
int[] alphabetLength,
ConstraintManager.Decomposition decomposition)
This method tries to disconnect the constraints and create the models.
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Modifier and Type | Method and Description |
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protected MEM[] |
MEManager.getFactors(ArrayList<int[]> list,
boolean reduce,
ConstraintManager.Decomposition decomposition)
This method returns an array of independent maximum entropy models parsed from the given constraints.
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protected MEM[] |
MEManager.getFactors(String constraints,
boolean reduce,
ConstraintManager.Decomposition decomposition)
This method returns an array of independent maximum entropy models parsed from the given constraints.
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Constructor and Description |
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FSMEMParameterSet(AlphabetContainer alphabet,
int length,
double ess,
String description,
ConstraintManager.Decomposition decomposition,
boolean reduce,
byte algorithm,
double epsilon,
String constraints)
The fast constructor.
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MEManagerParameterSet(Class<? extends MEManager> instanceClass,
AlphabetContainer alphabet,
int length,
double ess,
String description,
ConstraintManager.Decomposition decomposition,
boolean reduce,
byte algorithm,
double epsilon)
The fast constructor.
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