Package de.jstacs.sequenceScores.statisticalModels.trainable.hmm

The package provides all interfaces and classes for a hidden Markov model (HMM).

See: Description

Class Summary

Class	Description
AbstractHMM	This class is the super class of all implementations hidden Markov models (HMMs) in Jstacs.
HMMFactory	This class allows to create some frequently used HMMs.
HMMFactory.PseudoTransitionElement	This class is used as place holder for a later BasicHigherOrderTransition.AbstractTransitionElement.

Enum Summary

Enum	Description
HMMFactory.HMMType	This enum defines some standard architecture of profile HMMs.

Package de.jstacs.sequenceScores.statisticalModels.trainable.hmm Description

The package provides all interfaces and classes for a hidden Markov model (HMM). It provides different implementations for states, transitions, parameter sets for training, and discrete as well as continuous emissions.

Since:

Jstacs 1.5

See Also:

AbstractHMM, State, Transition, HMMTrainingParameterSet