Uses of Interface
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.SamplingEmission

Packages that use SamplingEmission

Package	Description
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models	The package provides different implementations of hidden Markov models based on AbstractHMM.
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states	The package provides all interfaces and classes for states used in hidden Markov models.
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete

Uses of SamplingEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models

Constructors in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models with parameters of type SamplingEmission

Constructor and Description
SamplingHigherOrderHMM(SamplingHMMTrainingParameterSet trainingParameterSet, String[] name, int[] emissionIdx, boolean[] forward, SamplingEmission[] emission, TransitionElement... te) This is the main constructor.

Uses of SamplingEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states

Constructors in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states with parameters of type SamplingEmission

Constructor and Description
SimpleSamplingState(SamplingEmission e, String name, boolean forward) This constructor creates a state that can be used in a HMM that obtains its parameters from sampling.

Uses of SamplingEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions

Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions that implement SamplingEmission

Modifier and Type	Class and Description
class	SilentEmission This class implements a silent emission which is used to create silent states.

Uses of SamplingEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete

Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete that implement SamplingEmission

Modifier and Type	Class and Description
class	AbstractConditionalDiscreteEmission The abstract super class of discrete emissions.
class	DiscreteEmission This class implements a simple discrete emission without any condition.
class	PhyloDiscreteEmission Phylogenetic discrete emission This class uses a phylogenetic tree to describe multidimensional data It implements Felsensteins model for nucleotide substitution (F81)
class	ReferenceSequenceDiscreteEmission This class implements a discrete emission that depends on some ReferenceSequenceAnnotation at a certain reference position.