Package | Description |
---|---|
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.shared | |
de.jstacs.sequenceScores.statisticalModels.trainable.mixture |
This package is the super package for any mixture model.
|
de.jstacs.sequenceScores.statisticalModels.trainable.mixture.motif |
Modifier and Type | Class and Description |
---|---|
class |
SharedStructureMixture
This class handles a mixture of models with the same structure that is
learned via EM.
|
Modifier and Type | Class and Description |
---|---|
class |
MixtureTrainSM
The class for a mixture model of any
TrainableStatisticalModel s. |
class |
StrandTrainSM
This model handles sequences that can either lie on the forward strand or on
the reverse complementary strand.
|
Modifier and Type | Method and Description |
---|---|
AbstractMixtureTrainSM |
AbstractMixtureTrainSM.clone() |
Modifier and Type | Class and Description |
---|---|
class |
HiddenMotifMixture
This is the main class that every generative motif discoverer should
implement.
|
class |
ZOOPSTrainSM
This class enables the user to search for a single motif in a sequence.
|