by Jan Grau, Ivo Grosse, Stefan Posch, and Jens Keilwagen
DBcorrDB provides a data base of 1541 motifs discovered from 757 ENCODE data sets for 166 transcription factors, as well as RNA-polymerase II and III.
You can search the data base using
- position frequency matrices (PFMs) or position weight matrices (PWMs) in Jaspar format (example),
- a data set of aligned sequences in FastA format, which are used to infer a PWM, or
- score profiles over de Bruijn sequences in a pseudo-FastA format.
Here, we additionally provide all motifs and all motif clusters for download.