by Ralf Eggeling, Ivo Grosse, and Jan Grau.
InMoDe is a collection of seven tools for learning, leveraging, and visualizing intra-motif dependencies within DNA binding sites and similar functional nucleotide sequences.
For a detailed description of the functionality of InMoDe see the user guide.
If you use InMoDe, please cite
R. Eggeling, I. Grosse, and J. Grau. InMoDe: tools for learning and visualizing intra-motif dependencies of DNA binding sites. Bioinformatics, 2017; 33(4): 580-582. doi: 10.1093/bioinformatics/btw689
Download and installation
InMoDe offers three user interfaces.
- InMoDeGUI.jar -- graphical user interface
- InMoDeCLI.jar -- command line interface
- InMoDeGalaxy.jar -- for integration into own Galaxy instance
that can be started by
java -jar filename.jar
and require an existent Java installation (8u74 or later).
Both do not require a recent Java, as they automatically install the required libraries to the local machine.
A server with all tools of InMoDe is available for public use at . The provided web-server puts a certain limit on the complexity of runnable jobs for the learning tools. For unlimited use, please download InMoDe and install it to your local machine or own Galaxy instance.