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''June 1, 2011:<br />
Jstacs 1.5 released
* new package [http://www.jstacs.de/api/de/jstacs/algorithms/alignment/package-summary.html de.jstacs.algorithms.alignment] for sequence alignment algorithms
* new class [http://www.jstacs.de/api/de/jstacs/models/ModelFactory.html de.jstacs.models.ModelFactory] with static classes to construct many standard models
* [http://www.jstacs.de/api/de/jstacs/utils/galaxy/GalaxyAdaptor.html de.jstacs.utils.galaxy.GalaxyAdaptor], an adaptor to [http://galaxy.psu.edu/ Galaxy], which allows for creating Galaxy applications using Jstacs [http://www.jstacs.de/api/de/jstacs/parameters/ParameterSet.html ParameterSets], also requires new interface [http://www.jstacs.de/api/de/jstacs/parameters/GalaxyConvertible.html GalaxyConvertible]
* new package [http://www.jstacs.de/api/de/jstacs/models/hmm/package-summary.html de.jstacs.models.hmm] for a variety of hidden Markov models, which can be learned by different learning principles including generative and discriminative learning principles, maximization and sampling methods
* new package [http://www.jstacs.de/api/de/jstacs/sampling/package-summary.html de.jstacs.sampling] that contains general infrastructure for parameter sampling
* new class [http://www.jstacs.de/api/de/jstacs/scoringFunctions/MappingScoringFunction.html de.jstacs.scoringFunctions.MappingScoringFunction] that allows for internal mapping of symbols from the alphabet
* new package [http://www.jstacs.de/api/de/jstacs/classifier/scoringFunctionBased/sampling/package-summary.html de.jstacs.classifier.scoringFunctionBases.sampling] containing classifiers that sample their parameters by the Metropolis-Hastings algorithm
* new interface [http://www.jstacs.de/api/de/jstacs/scoringFunctions/SamplingScoringFunction.html de.jstacs.scoringFunctions.SamplingScoringFunction] for [http://www.jstacs.de/api/de/jstacs/scoringFunctions/NormalizableScoringFunction.html NormalizableScoringFunctions] that can be used in Metropolis-Hastings sampling of parameters
* bugfix in [http://www.jstacs.de/api/de/jstacs/io/XMLParser.html XMLParser] for cases, where the tag of interest also occurrs within other, nested tags
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''December 31, 2010:<br />
''December 31, 2010:<br />
Jstacs 1.4 released
Jstacs 1.4 released

Revision as of 13:22, 1 June 2011

June 1, 2011:
Jstacs 1.5 released


December 31, 2010:
Jstacs 1.4 released


March 2, 2010:
Jstacs 1.3.1 released

  • Partitioning of Samples including weights
  • Release of Dispom (de-novo discovery of differentially abundant transcription factor binding sites including their positional preference)
  • Several bugfixes

December 2, 2009:
Jstacs 1.3 released


April 8, 2009:
Jstacs 1.2.2 released

  • Bugfix-Release

February 19, 2009:
Jstacs 1.2.1 released


February 2, 2009:
Jstacs 1.2 released


October 29, 2008:
Jstacs 1.1 released


September 8, 2008:
The first version of Jstacs has been released.