DBcorrDB: Difference between revisions
From Jstacs
Jump to navigationJump to search
(Created page with "by Jan Grau, Ivo Grosse, Stefan Posch, and Jens Keilwagen [http://galaxy.informatik.uni-halle.de DBcorrDB] provides a data base of 1541 motifs discovered from 757 ENCODE data se...") |
No edit summary |
||
| Line 1: | Line 1: | ||
by Jan Grau, Ivo Grosse, Stefan Posch, and Jens Keilwagen | by Jan Grau, Ivo Grosse, Stefan Posch, and Jens Keilwagen | ||
[http://galaxy.informatik.uni-halle.de DBcorrDB] provides a data base of 1541 motifs discovered from 757 ENCODE data sets for 166 transcription factors, | [http://galaxy.informatik.uni-halle.de DBcorrDB] provides a data base of 1541 motifs discovered from 757 ENCODE data sets for 166 transcription factors, as well as RNA-polymerase II and III. | ||
You can search the data base using | You can search the data base using | ||
# position frequency matrices (PFMs) or position weight matrices (PWMs) in Jaspar format ([http://www.jstacs.de/downloads/pax5.txt example]), | |||
# a data set of aligned sequences in FastA format, which are used to infer a PWM, or | |||
# score profiles over de Bruijn sequences in a pseudo-FastA format. | |||
Here, we additionally provide all motifs and all motif clusters for download. | Here, we additionally provide all motifs and all motif clusters for download. | ||
Latest revision as of 12:17, 2 July 2015
by Jan Grau, Ivo Grosse, Stefan Posch, and Jens Keilwagen
DBcorrDB provides a data base of 1541 motifs discovered from 757 ENCODE data sets for 166 transcription factors, as well as RNA-polymerase II and III.
You can search the data base using
- position frequency matrices (PFMs) or position weight matrices (PWMs) in Jaspar format (example),
- a data set of aligned sequences in FastA format, which are used to infer a PWM, or
- score profiles over de Bruijn sequences in a pseudo-FastA format.
Here, we additionally provide all motifs and all motif clusters for download.
