DBcorrDB
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by Jan Grau, Ivo Grosse, Stefan Posch, and Jens Keilwagen
DBcorrDB provides a data base of 1541 motifs discovered from 757 ENCODE data sets for 166 transcription factors, and RNA-polymerase II and III.
You can search the data base using i) position frequency matrices (PFMs) or position weight matrices (PWMs) in Jaspar format (example), ii) a data set of aligned sequences in FastA format, which are used to infer a PWM, or iii) score profiles over de Bruijn sequences in a pseudo-FastA format.
Here, we additionally provide all motifs and all motif clusters for download.