Uses of Interface
de.jstacs.models.hmm.states.emissions.SamplingEmission

Packages that use SamplingEmission

de.jstacs.models.hmm.models	The package provides different implementations of hidden Markov models based on AbstractHMM
de.jstacs.models.hmm.states	The package provides all interfaces and classes for states used in hidden Markov models.
de.jstacs.models.hmm.states.emissions
de.jstacs.models.hmm.states.emissions.discrete

Uses of SamplingEmission in de.jstacs.models.hmm.models

Constructors in de.jstacs.models.hmm.models with parameters of type SamplingEmission

SamplingHigherOrderHMM(SamplingHMMTrainingParameterSet trainingParameterSet, String[] name, int[] emissionIdx, boolean[] forward, SamplingEmission[] emission, TransitionElement... te)
This is the main constructor.

Uses of SamplingEmission in de.jstacs.models.hmm.states

Constructors in de.jstacs.models.hmm.states with parameters of type SamplingEmission

SimpleSamplingState(SamplingEmission e, String name, boolean forward)
This constructor creates a state that can be used in a HMM that obtains its parameters from sampling.

Uses of SamplingEmission in de.jstacs.models.hmm.states.emissions

Classes in de.jstacs.models.hmm.states.emissions that implement SamplingEmission

class

SilentEmission This class implements a silent emission which is used to create silent states.

Uses of SamplingEmission in de.jstacs.models.hmm.states.emissions.discrete

Classes in de.jstacs.models.hmm.states.emissions.discrete that implement SamplingEmission

class	AbstractConditionalDiscreteEmission The abstract super class of discrete emissions.
class	DiscreteEmission This class implements a simple discrete emission without any condition.
class	PhyloDiscreteEmission Phylogenetic discrete emission This class uses a phylogenetic tree to describe multidimensional data It implements Felsensteins model for nucleotide substitution (F81)
class	ReferenceSequenceDiscreteEmission This class implements a discrete emission that depends on some ReferenceSequenceAnnotation at a certain reference position.