Uses of Class
de.jstacs.models.hmm.transitions.elements.TransitionElement

Packages that use TransitionElement

de.jstacs.models.hmm.models	The package provides different implementations of hidden Markov models based on AbstractHMM
de.jstacs.models.hmm.transitions	The package provides all interfaces and classes for transitions used in hidden Markov models.
de.jstacs.models.hmm.transitions.elements

Uses of TransitionElement in de.jstacs.models.hmm.models

Constructors in de.jstacs.models.hmm.models with parameters of type TransitionElement

DifferentiableHigherOrderHMM(MaxHMMTrainingParameterSet trainingParameterSet, String[] name, int[] emissionIdx, boolean[] forward, DifferentiableEmission[] emission, boolean likelihood, double ess, TransitionElement... te)
This is the main constructor.

SamplingHigherOrderHMM(SamplingHMMTrainingParameterSet trainingParameterSet, String[] name, int[] emissionIdx, boolean[] forward, SamplingEmission[] emission, TransitionElement... te)
This is the main constructor.

SamplingPhyloHMM(SamplingHMMTrainingParameterSet trainingParameterSet, String[] name, int[] emissionIdx, boolean[] forward, PhyloDiscreteEmission[] emission, TransitionElement... te)
This is the main constructor for a hidden markov model with phylogenetic emission(s) This model can be trained using a metropolis hastings algorithm

Uses of TransitionElement in de.jstacs.models.hmm.transitions

Constructors in de.jstacs.models.hmm.transitions with parameters of type TransitionElement

HigherOrderTransition(boolean[] isSilent, TransitionElement... transitions)
The main constructor.

Uses of TransitionElement in de.jstacs.models.hmm.transitions.elements

Methods in de.jstacs.models.hmm.transitions.elements that return TransitionElement

TransitionElement

TransitionElement.clone()