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Packages that use de.jstacs.results | |
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de.jstacs.classifier | This package provides the framework for any classifier. |
de.jstacs.classifier.assessment | This package allows to assess classifiers. |
de.jstacs.classifier.modelBased | Provides the classes for Classifier s that are based on Model s |
de.jstacs.classifier.scoringFunctionBased | Provides the classes for Classifier s that are based on ScoringFunction s. |
de.jstacs.classifier.scoringFunctionBased.sampling | Provides the classes for AbstractScoreBasedClassifier s that are based on SamplingScoringFunction s and that sample parameters
using the Metropolis-Hastings algorithm. |
de.jstacs.classifier.utils | Provides some useful classes for working with classifiers |
de.jstacs.data | Provides classes for the representation of data. |
de.jstacs.data.sequences.annotation | Provides the facilities to annotate Sequence s using a number of pre-defined annotation types, or additional
implementations of the SequenceAnnotation class |
de.jstacs.models | Provides the interface Model and its abstract implementation AbstractModel , which is the super class of all other models. |
de.jstacs.models.discrete.homogeneous | |
de.jstacs.models.discrete.inhomogeneous | This package contains various inhomogeneous models. |
de.jstacs.models.discrete.inhomogeneous.shared | |
de.jstacs.models.hmm.models | The package provides different implementations of hidden Markov models based on AbstractHMM |
de.jstacs.models.mixture | This package is the super package for any mixture model. |
de.jstacs.motifDiscovery | This package provides the framework including the interface for any de novo motif discoverer |
de.jstacs.results | This package provides classes for results and sets of results. |
de.jstacs.utils.galaxy |
Classes in de.jstacs.results used by de.jstacs.classifier | |
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CategoricalResult
A class for categorical results (i.e. non-numerical results) for primitives and String s. |
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ImageResult
A class for results that are images of the PNG format. |
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NumericalResult
Class for numerical Result values. |
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NumericalResultSet
Class for a set of numerical result values, which are all of the type NumericalResult . |
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Result
The abstract class for any result. |
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ResultSet
Class for a set of Result s which provides methods to access single
Result s in the set, to retrieve the number of Result s in the
set, to get a String representation or an XML representation of all
the Result s in the set. |
Classes in de.jstacs.results used by de.jstacs.classifier.assessment | |
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ListResult
Class for a Result that contains a list or a matrix, respectively, of
ResultSet s. |
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MeanResultSet
Class that computes the mean and the standard error of a series of NumericalResultSet s. |
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MeanResultSet.AdditionImpossibleException
Class for the exception that is thrown if two MeanResultSet s
should be added that do not match. |
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MeanResultSet.InconsistentResultNumberException
Class for the exception that is thrown if a NumericalResultSet is
added to the MeanResultSet that has a number of results which is
not equal to the number of results of the previously added results. |
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Result
The abstract class for any result. |
Classes in de.jstacs.results used by de.jstacs.classifier.modelBased | |
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CategoricalResult
A class for categorical results (i.e. non-numerical results) for primitives and String s. |
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NumericalResultSet
Class for a set of numerical result values, which are all of the type NumericalResult . |
|
ResultSet
Class for a set of Result s which provides methods to access single
Result s in the set, to retrieve the number of Result s in the
set, to get a String representation or an XML representation of all
the Result s in the set. |
Classes in de.jstacs.results used by de.jstacs.classifier.scoringFunctionBased | |
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CategoricalResult
A class for categorical results (i.e. non-numerical results) for primitives and String s. |
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NumericalResultSet
Class for a set of numerical result values, which are all of the type NumericalResult . |
Classes in de.jstacs.results used by de.jstacs.classifier.scoringFunctionBased.sampling | |
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CategoricalResult
A class for categorical results (i.e. non-numerical results) for primitives and String s. |
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NumericalResultSet
Class for a set of numerical result values, which are all of the type NumericalResult . |
Classes in de.jstacs.results used by de.jstacs.classifier.utils | |
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ImageResult
A class for results that are images of the PNG format. |
Classes in de.jstacs.results used by de.jstacs.data | |
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ImageResult
A class for results that are images of the PNG format. |
Classes in de.jstacs.results used by de.jstacs.data.sequences.annotation | |
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Result
The abstract class for any result. |
|
ResultSet
Class for a set of Result s which provides methods to access single
Result s in the set, to retrieve the number of Result s in the
set, to get a String representation or an XML representation of all
the Result s in the set. |
Classes in de.jstacs.results used by de.jstacs.models | |
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NumericalResultSet
Class for a set of numerical result values, which are all of the type NumericalResult . |
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ResultSet
Class for a set of Result s which provides methods to access single
Result s in the set, to retrieve the number of Result s in the
set, to get a String representation or an XML representation of all
the Result s in the set. |
Classes in de.jstacs.results used by de.jstacs.models.discrete.homogeneous | |
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NumericalResultSet
Class for a set of numerical result values, which are all of the type NumericalResult . |
Classes in de.jstacs.results used by de.jstacs.models.discrete.inhomogeneous | |
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NumericalResultSet
Class for a set of numerical result values, which are all of the type NumericalResult . |
Classes in de.jstacs.results used by de.jstacs.models.discrete.inhomogeneous.shared | |
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CategoricalResult
A class for categorical results (i.e. non-numerical results) for primitives and String s. |
Classes in de.jstacs.results used by de.jstacs.models.hmm.models | |
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NumericalResultSet
Class for a set of numerical result values, which are all of the type NumericalResult . |
|
ResultSet
Class for a set of Result s which provides methods to access single
Result s in the set, to retrieve the number of Result s in the
set, to get a String representation or an XML representation of all
the Result s in the set. |
Classes in de.jstacs.results used by de.jstacs.models.mixture | |
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NumericalResultSet
Class for a set of numerical result values, which are all of the type NumericalResult . |
|
ResultSet
Class for a set of Result s which provides methods to access single
Result s in the set, to retrieve the number of Result s in the
set, to get a String representation or an XML representation of all
the Result s in the set. |
Classes in de.jstacs.results used by de.jstacs.motifDiscovery | |
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ImageResult
A class for results that are images of the PNG format. |
|
ListResult
Class for a Result that contains a list or a matrix, respectively, of
ResultSet s. |
Classes in de.jstacs.results used by de.jstacs.results | |
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ListResult
Class for a Result that contains a list or a matrix, respectively, of
ResultSet s. |
|
MeanResultSet
Class that computes the mean and the standard error of a series of NumericalResultSet s. |
|
MeanResultSet.AdditionImpossibleException
Class for the exception that is thrown if two MeanResultSet s
should be added that do not match. |
|
MeanResultSet.InconsistentResultNumberException
Class for the exception that is thrown if a NumericalResultSet is
added to the MeanResultSet that has a number of results which is
not equal to the number of results of the previously added results. |
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NumericalResult
Class for numerical Result values. |
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NumericalResultSet
Class for a set of numerical result values, which are all of the type NumericalResult . |
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Result
The abstract class for any result. |
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ResultSet
Class for a set of Result s which provides methods to access single
Result s in the set, to retrieve the number of Result s in the
set, to get a String representation or an XML representation of all
the Result s in the set. |
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SimpleResult
Abstract class for a Result with a value of a primitive data type or
String . |
Classes in de.jstacs.results used by de.jstacs.utils.galaxy | |
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ImageResult
A class for results that are images of the PNG format. |
|
Result
The abstract class for any result. |
|
ResultSet
Class for a set of Result s which provides methods to access single
Result s in the set, to retrieve the number of Result s in the
set, to get a String representation or an XML representation of all
the Result s in the set. |
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