Uses of Class
de.jstacs.results.ResultSet

Packages that use ResultSet

de.jstacs.classifier	This package provides the framework for any classifier.
de.jstacs.classifier.modelBased	Provides the classes for Classifiers that are based on Models
de.jstacs.data.sequences.annotation	Provides the facilities to annotate Sequences using a number of pre-defined annotation types, or additional implementations of the SequenceAnnotation class
de.jstacs.models	Provides the interface Model and its abstract implementation AbstractModel, which is the super class of all other models.
de.jstacs.models.hmm.models	The package provides different implementations of hidden Markov models based on AbstractHMM
de.jstacs.models.mixture	This package is the super package for any mixture model.
de.jstacs.results	This package provides classes for results and sets of results.
de.jstacs.utils.galaxy

Uses of ResultSet in de.jstacs.classifier

Methods in de.jstacs.classifier that return ResultSet

ResultSet	AbstractClassifier.evaluateAll(MeasureParameters params, boolean exceptionIfNotComputeable, Sample... s) This method evaluates the classifier and computes all results.
ResultSet	AbstractClassifier.getCharacteristics() Returns some information characterizing or describing the current instance of the classifier.

Uses of ResultSet in de.jstacs.classifier.modelBased

Methods in de.jstacs.classifier.modelBased that return ResultSet

ResultSet

ModelBasedClassifier.getCharacteristics()

Uses of ResultSet in de.jstacs.data.sequences.annotation

Subclasses of ResultSet in de.jstacs.data.sequences.annotation

class	CisRegulatoryModuleAnnotation Annotation for a cis-regulatory module as defined by a set of MotifAnnotations of the motifs in the module.
class	IntronAnnotation Annotation class for an intron as defined by a donor and an acceptor splice site.
class	LocatedSequenceAnnotation Class for a SequenceAnnotation that has a position on the sequence, e.g for transcription start sites or intron-exon junctions.
class	LocatedSequenceAnnotationWithLength Class for a SequenceAnnotation that has a position on the sequence and a length, e.g. for donor splice sites, exons or genes.
class	MotifAnnotation Class for a StrandedLocatedSequenceAnnotationWithLength that is a motif.
class	ReferenceSequenceAnnotation This class implements a SequenceAnnotation that contains a reference sequence.
class	SequenceAnnotation Class for a general annotation of a Sequence.
class	SinglePositionSequenceAnnotation Class for some annotations that consist mainly of one position on a sequence.
class	StrandedLocatedSequenceAnnotationWithLength Class for a SequenceAnnotation that has a position, a length and an orientation on the strand of a Sequence.

Uses of ResultSet in de.jstacs.models

Methods in de.jstacs.models that return ResultSet

ResultSet	Model.getCharacteristics() Returns some information characterizing or describing the current instance of the model.
ResultSet	CompositeModel.getCharacteristics()
ResultSet	AbstractModel.getCharacteristics()

Uses of ResultSet in de.jstacs.models.hmm.models

Methods in de.jstacs.models.hmm.models that return ResultSet

ResultSet

HigherOrderHMM.getCharacteristics()

Uses of ResultSet in de.jstacs.models.mixture

Methods in de.jstacs.models.mixture that return ResultSet

ResultSet

AbstractMixtureModel.getCharacteristics()

Uses of ResultSet in de.jstacs.results

Subclasses of ResultSet in de.jstacs.results

class	MeanResultSet Class that computes the mean and the standard error of a series of NumericalResultSets.
class	NumericalResultSet Class for a set of numerical result values, which are all of the type NumericalResult.

Fields in de.jstacs.results declared as ResultSet

protected ResultSet[]

ListResult.list The internal list of ResultSets that are part of this ListResult

Methods in de.jstacs.results that return ResultSet

ResultSet	ListResult.getAnnotation() Returns a reference to the annotation of this ListResult.
ResultSet	MeanResultSet.getInfos() Returns some information for this MeanResultSet.
ResultSet[]	ListResult.getRawResult() Returns a copy of the internal list of ResultSets.
ResultSet[]	ListResult.getResult()

Constructors in de.jstacs.results with parameters of type ResultSet

ListResult(String name, String comment, ResultSet annotation, ResultSet... results)
Creates a new ListResult from an array of ResultSets and a ResultSet of annotations, which may provide additional information on this ListResult.

ListResult(String name, String comment, ResultSet annotation, ResultSet... results)
Creates a new ListResult from an array of ResultSets and a ResultSet of annotations, which may provide additional information on this ListResult.

Uses of ResultSet in de.jstacs.utils.galaxy

Methods in de.jstacs.utils.galaxy with parameters of type ResultSet

void	GalaxyAdaptor.addResultSet(ResultSet res, boolean exportAll, boolean includeInSummary) Adds a set of results to the results of a program run.