Uses of Interface
de.jstacs.sampling.SamplingFromStatistic

Packages that use SamplingFromStatistic

de.jstacs.models.hmm.states	The package provides all interfaces and classes for states used in hidden Markov models.
de.jstacs.models.hmm.states.emissions
de.jstacs.models.hmm.states.emissions.discrete
de.jstacs.models.hmm.transitions	The package provides all interfaces and classes for transitions used in hidden Markov models.

Uses of SamplingFromStatistic in de.jstacs.models.hmm.states

Subinterfaces of SamplingFromStatistic in de.jstacs.models.hmm.states

interface

SamplingState

Classes in de.jstacs.models.hmm.states that implement SamplingFromStatistic

class

SimpleSamplingState This class implements a state that can be used for a HMM that obtains its parameters from sampling.

Uses of SamplingFromStatistic in de.jstacs.models.hmm.states.emissions

Subinterfaces of SamplingFromStatistic in de.jstacs.models.hmm.states.emissions

interface

SamplingEmission

Classes in de.jstacs.models.hmm.states.emissions that implement SamplingFromStatistic

class

SilentEmission This class implements a silent emission which is used to create silent states.

Uses of SamplingFromStatistic in de.jstacs.models.hmm.states.emissions.discrete

Classes in de.jstacs.models.hmm.states.emissions.discrete that implement SamplingFromStatistic

class	AbstractConditionalDiscreteEmission The abstract super class of discrete emissions.
class	DiscreteEmission This class implements a simple discrete emission without any condition.
class	PhyloDiscreteEmission Phylogenetic discrete emission This class uses a phylogenetic tree to describe multidimensional data It implements Felsensteins model for nucleotide substitution (F81)
class	ReferenceSequenceDiscreteEmission This class implements a discrete emission that depends on some ReferenceSequenceAnnotation at a certain reference position.

Uses of SamplingFromStatistic in de.jstacs.models.hmm.transitions

Subinterfaces of SamplingFromStatistic in de.jstacs.models.hmm.transitions

interface

SamplingTransition This interface declares all method used during a sampling.

Classes in de.jstacs.models.hmm.transitions that implement SamplingFromStatistic

class

HigherOrderTransition This class can be used in any AbstractHMM allowing to use gradient based or sampling training algorithm.