Uses of Package
de.jstacs.scoringFunctions.mix.motifSearch

Packages that use de.jstacs.scoringFunctions.mix.motifSearch

de.jstacs.scoringFunctions.directedGraphicalModels	Provides ScoringFunctions that are equivalent to directed graphical models.
de.jstacs.scoringFunctions.mix.motifSearch

Classes in de.jstacs.scoringFunctions.mix.motifSearch used by de.jstacs.scoringFunctions.directedGraphicalModels

DurationScoringFunction
This class is the super class for all one dimensional position scoring functions that can be used as durations for semi Markov models.

Classes in de.jstacs.scoringFunctions.mix.motifSearch used by de.jstacs.scoringFunctions.mix.motifSearch

DurationScoringFunction
This class is the super class for all one dimensional position scoring functions that can be used as durations for semi Markov models.

HiddenMotifsMixture
This class handles mixtures with at least one hidden motif.

MixtureDuration
This class implements a mixture of DurationScoringFunctions.

PositionScoringFunction
This class implements a position scoring function that enables the user to get a score without using a Sequence object.

SkewNormalLikeScoringFunction
This class implements a skew normal like discrete truncated distribution.