Uses of Class
de.jstacs.scoringFunctions.mix.motifSearch.DurationScoringFunction

Packages that use DurationScoringFunction

de.jstacs.scoringFunctions.directedGraphicalModels	Provides ScoringFunctions that are equivalent to directed graphical models.
de.jstacs.scoringFunctions.mix.motifSearch

Uses of DurationScoringFunction in de.jstacs.scoringFunctions.directedGraphicalModels

Constructors in de.jstacs.scoringFunctions.directedGraphicalModels with parameters of type DurationScoringFunction

MutableMarkovModelScoringFunction(AlphabetContainer alphabet, int length, double ess, boolean plugInParameters, InhomogeneousMarkov structureMeasure, DurationScoringFunction lengthPenalty)
This constructor creates an instance with an prior for the modeled length.

MutableMarkovModelScoringFunction(AlphabetContainer alphabet, int length, double ess, boolean plugInParameters, int order, DurationScoringFunction lengthPenalty)
This constructor creates an instance with an prior for the modeled length.

Uses of DurationScoringFunction in de.jstacs.scoringFunctions.mix.motifSearch

Subclasses of DurationScoringFunction in de.jstacs.scoringFunctions.mix.motifSearch

class	MixtureDuration This class implements a mixture of DurationScoringFunctions.
class	SkewNormalLikeScoringFunction This class implements a skew normal like discrete truncated distribution.
class	UniformDurationScoringFunction This scoring function implements a uniform distribution for positions.

Constructors in de.jstacs.scoringFunctions.mix.motifSearch with parameters of type DurationScoringFunction

HiddenMotifsMixture(boolean type, int length, int starts, boolean plugIn, HomogeneousScoringFunction bg, NormalizableScoringFunction[] motif, DurationScoringFunction[] posPrior, boolean plugInBg)
This constructor creates an instance of HiddenMotifsMixture that allows to have one site of the specified motifs in a Sequence.

HiddenMotifsMixture(boolean type, int length, int starts, boolean plugIn, HomogeneousScoringFunction bg, NormalizableScoringFunction motif, DurationScoringFunction posPrior, boolean plugInBg)
This constructor creates an instance of HiddenMotifsMixture that is either an OOPS or a ZOOPS model depending on the chosen type.

MixtureDuration(int starts, DurationScoringFunction... function)
The main constructor of a MixtureDuration.