Uses of Class
de.jstacs.algorithms.alignment.Alignment.AlignmentType

Packages that use Alignment.AlignmentType

de.jstacs.algorithms.alignment

Provides classes for alignments.

Uses of Alignment.AlignmentType in de.jstacs.algorithms.alignment

Methods in de.jstacs.algorithms.alignment that return Alignment.AlignmentType

static Alignment.AlignmentType	Alignment.AlignmentType.valueOf(String name) Returns the enum constant of this type with the specified name.
static Alignment.AlignmentType[]	Alignment.AlignmentType.values() Returns an array containing the constants of this enum type, in the order they are declared.

Constructors in de.jstacs.algorithms.alignment with parameters of type Alignment.AlignmentType

Alignment(Alignment.AlignmentType type, Costs costs)
Creates a new Alignment instance that aligns the sequences s1 and s2 using the costs defined in costs.

Alignment(Alignment.AlignmentType type, Costs costs, int offDiagonal)
Creates a new Alignment instance that aligns the sequences s1 and s2 using the costs defined in costs and a banded version of the alignment algorithm.