Uses of Class
de.jstacs.data.alphabets.DiscreteAlphabetMapping

Packages that use DiscreteAlphabetMapping

de.jstacs.data.sequences	Provides classes for representing sequences. The implementations of sequences currently include DiscreteSequences prepared for alphabets of different sizes, and ArbitrarySequences that may contain continuous values as well. As sub-package provides the facilities to annotate Sequences.
de.jstacs.sequenceScores.statisticalModels.differentiable	Provides all DifferentiableStatisticalModels, which can compute the gradient with respect to their parameters for a given input Sequence.

Uses of DiscreteAlphabetMapping in de.jstacs.data.sequences

Fields in de.jstacs.data.sequences declared as DiscreteAlphabetMapping

protected DiscreteAlphabetMapping[]

MappedDiscreteSequence.transformation The DiscreteAlphabetMappings used for mapping the original Sequence.

Methods in de.jstacs.data.sequences with parameters of type DiscreteAlphabetMapping

static AlphabetContainer

MappedDiscreteSequence.getNewAlphabetContainer(AlphabetContainer original, DiscreteAlphabetMapping... transformation) This method allows to create a new AlphabetContainer given an old AlphabetContainer and some DiscreteAlphabetMappings.

Constructors in de.jstacs.data.sequences with parameters of type DiscreteAlphabetMapping

MappedDiscreteSequence(AlphabetContainer originalAlphabetContainer, SequenceAnnotation[] seqAn, DiscreteAlphabetMapping... transformation)
This method allows to create an empty MappedDiscreteSequence.

MappedDiscreteSequence(SimpleDiscreteSequence original, DiscreteAlphabetMapping... transformation)
This method allows to create a MappedDiscreteSequence from a given Sequence and some given DiscreteAlphabetMappings.

Uses of DiscreteAlphabetMapping in de.jstacs.sequenceScores.statisticalModels.differentiable

Constructors in de.jstacs.sequenceScores.statisticalModels.differentiable with parameters of type DiscreteAlphabetMapping

MappingDiffSM(AlphabetContainer originalAlphabetContainer, DifferentiableStatisticalModel nsf, DiscreteAlphabetMapping... mapping)
The main constructor creating a MappingDiffSM.