|
||||||||||
| PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES | |||||||||
DNAAlphabet for the most common case of DNA-sequences.
See:
Description
| Class Summary | |
|---|---|
| Alphabet | Class for a set of symbols, i.e. |
| Alphabet.AlphabetParameterSet<T extends Alphabet> | The super class for the InstanceParameterSet of any
Alphabet. |
| ComplementableDiscreteAlphabet | This abstract class indicates that an alphabet can be used to compute the complement. |
| ContinuousAlphabet | Class for a continuous alphabet. |
| ContinuousAlphabet.ContinuousAlphabetParameterSet | Class for the ParameterSet of a
ContinuousAlphabet. |
| DiscreteAlphabet | Class for an alphabet that consists of arbitrary Strings. |
| DiscreteAlphabet.DiscreteAlphabetParameterSet | Class for the ParameterSet of a
DiscreteAlphabet. |
| DiscreteAlphabetMapping | This class implements the transformation of discrete values to other discrete values
which define a DiscreteAlphabet. |
| DNAAlphabet | This class implements the discrete alphabet that is used for DNA. |
| DNAAlphabet.DNAAlphabetParameterSet | The parameter set for a DNAAlphabet. |
| DNAAlphabetContainer | This class implements a singleton for an AlphabetContainer that can be used for DNA. |
| DNAAlphabetContainer.DNAAlphabetContainerParameterSet | This class implements a singleton for the ParameterSet of a DNAAlphabetContainer. |
| GenericComplementableDiscreteAlphabet | This class implements an generic complementable discrete alphabet. |
| GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet | This class is used as container for the parameters of a GenericComplementableDiscreteAlphabet. |
| ProteinAlphabet | This class implements the discrete alphabet that is used for proteins (one letter code). |
| ProteinAlphabet.ProteinAlphabetParameterSet | The parameter set for a ProteinAlphabet. |
| Exception Summary | |
|---|---|
| DoubleSymbolException | A DoubleSymbolException is thrown if a symbol occurred more than once
in an alphabet. |
Provides classes for the representation of discrete and continuous alphabets, including a DNAAlphabet for the most common case of DNA-sequences.
|
||||||||||
| PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES | |||||||||