de.jstacs.data.alphabets
Class ProteinAlphabet.ProteinAlphabetParameterSet

java.lang.Object
  de.jstacs.parameters.ParameterSet
      de.jstacs.parameters.InstanceParameterSet<T>
          de.jstacs.data.alphabets.Alphabet.AlphabetParameterSet<ProteinAlphabet>
              de.jstacs.data.alphabets.ProteinAlphabet.ProteinAlphabetParameterSet

All Implemented Interfaces:

GalaxyConvertible, Singleton, Storable, Cloneable

Enclosing class:

ProteinAlphabet

public static final class ProteinAlphabet.ProteinAlphabetParameterSet
extends Alphabet.AlphabetParameterSet<ProteinAlphabet>
implements Singleton

The parameter set for a ProteinAlphabet.

Author:

Jens Keilwagen

Nested Class Summary

Nested classes/interfaces inherited from class de.jstacs.parameters.ParameterSet

ParameterSet.ParameterList

Nested classes/interfaces inherited from interface de.jstacs.Singleton

Singleton.SingletonHandler

Field Summary

static ProteinAlphabet.ProteinAlphabetParameterSet

SINGLETON The only instance of this class.

Fields inherited from class de.jstacs.parameters.ParameterSet

errorMessage, parameters, parent

Method Summary

String

getInstanceComment() Returns a comment (a textual description) of the class that can be constructed using this ParameterSet.

Methods inherited from class de.jstacs.data.alphabets.Alphabet.AlphabetParameterSet

clone, getInstanceName

Methods inherited from class de.jstacs.parameters.InstanceParameterSet

fromXML, getInstance, getInstanceClass, toXML

Methods inherited from class de.jstacs.parameters.ParameterSet

fromGalaxy, getAllParameterNames, getComment, getComment, getErrorMessage, getIndex, getName, getName, getNumberOfParameters, getParameterAt, getParameterForName, getParent, hasDefaultOrIsSet, initParameterList, initParameterList, isAtomic, isComparable, parametersLoaded, reset, setParent, toGalaxy

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SINGLETON

public static final ProteinAlphabet.ProteinAlphabetParameterSet SINGLETON

The only instance of this class.

See Also:

Singleton

Method Detail

getInstanceComment

public String getInstanceComment()

Description copied from class: InstanceParameterSet

Returns a comment (a textual description) of the class that can be constructed using this ParameterSet.

Specified by:

getInstanceComment in class InstanceParameterSet<ProteinAlphabet>

Returns:

the comment of the class