de.jstacs.data.alphabets
Class ProteinAlphabet

java.lang.Object
  de.jstacs.data.alphabets.Alphabet
      de.jstacs.data.alphabets.DiscreteAlphabet
          de.jstacs.data.alphabets.ProteinAlphabet

All Implemented Interfaces:

InstantiableFromParameterSet, Singleton, Storable, Comparable<Alphabet>

public final class ProteinAlphabet
extends DiscreteAlphabet
implements Singleton

This class implements the discrete alphabet that is used for proteins (one letter code).

Author:

Jens Keilwagen

Nested Class Summary

static class

ProteinAlphabet.ProteinAlphabetParameterSet The parameter set for a ProteinAlphabet.

Nested classes/interfaces inherited from class de.jstacs.data.alphabets.DiscreteAlphabet

DiscreteAlphabet.DiscreteAlphabetParameterSet

Nested classes/interfaces inherited from class de.jstacs.data.alphabets.Alphabet

Alphabet.AlphabetParameterSet<T extends Alphabet>

Nested classes/interfaces inherited from interface de.jstacs.Singleton

Singleton.SingletonHandler

Field Summary

static ProteinAlphabet

SINGLETON The only instance of this class.

Fields inherited from class de.jstacs.data.alphabets.DiscreteAlphabet

alphabet, caseInsensitive, parameters

Method Summary

Methods inherited from class de.jstacs.data.alphabets.DiscreteAlphabet

compareTo, getCode, getCurrentParameterSet, getMaximalSymbolLength, getMin, getSymbolAt, ignoresCase, isEncodedSymbol, isSymbol, length, toString, toXML

Methods inherited from class de.jstacs.data.alphabets.Alphabet

checkConsistency

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

SINGLETON

public static final ProteinAlphabet SINGLETON

The only instance of this class.

See Also:

Singleton