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joinAndSetParameterFiles(boolean, File[]) - Method in class de.jstacs.classifiers.differentiableSequenceScoreBased.sampling.SamplingScoreBasedClassifier.DiffSMSamplingComponent

Combines parameter files such that they are accepted as parameter files of the calling SamplingScoreBasedClassifier

joinAndSetParameterFiles(boolean, File...) - Method in class de.jstacs.classifiers.differentiableSequenceScoreBased.sampling.SamplingScoreBasedClassifier

Combines parameter files such that they are accepted as parameter files of this SamplingScoreBasedClassifier

joinFunction() - Method in class de.jstacs.classifiers.differentiableSequenceScoreBased.AbstractMultiThreadedOptimizableFunction

This method joins the partial results that have been computed using AbstractMultiThreadedOptimizableFunction.evaluateFunction(int, int, int, int, int).

joinFunction() - Method in class de.jstacs.classifiers.differentiableSequenceScoreBased.gendismix.LogGenDisMixFunction

joinGradients() - Method in class de.jstacs.classifiers.differentiableSequenceScoreBased.AbstractMultiThreadedOptimizableFunction

This method joins the gradients of each part that have been computed using AbstractMultiThreadedOptimizableFunction.evaluateGradientOfFunction(int, int, int, int, int).

joinGradients() - Method in class de.jstacs.classifiers.differentiableSequenceScoreBased.gendismix.LogGenDisMixFunction

joinProfiles(double[][]) - Method in interface de.jstacs.motifDiscovery.SignificantMotifOccurrencesFinder.JoinMethod

Joins the profiles in profiles into a common profile, where each line of profiles corresponds to one profile to be joined

joinProfiles(double[][]) - Method in class de.jstacs.motifDiscovery.SignificantMotifOccurrencesFinder.SumOfProbabilities

joinStatistics(Emission...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.continuous.GaussianEmission

joinStatistics(Emission...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.continuous.MultivariateGaussianEmission

joinStatistics(Emission...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete.AbstractConditionalDiscreteEmission

joinStatistics(Emission...) - Method in interface de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.Emission

This method joins the statistics of different instances and sets this joined statistic as statistic of each instance.

joinStatistics(Emission...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.MixtureEmission

joinStatistics(Emission...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.SilentEmission

joinStatistics(Emission...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.UniformEmission

joinStatistics(BasicHigherOrderTransition.AbstractTransitionElement...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions.BasicHigherOrderTransition.AbstractTransitionElement

This method joins the statistics of different instances and sets this joined statistic as statistic of each instance.

joinStatistics(Transition...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions.BasicHigherOrderTransition

joinStatistics(Transition...) - Method in interface de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions.TransitionWithSufficientStatistic

This method joins the statistics of different instances and sets this joined statistic as statistic of each instance.

JstacsTool - Interface in de.jstacs.tools

Interface for a generic Jstacs tool.

JstacsTool.ResultEntry - Class in de.jstacs.tools

Representation of default results.

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