Uses of Package
de.jstacs.sequenceScores

Packages that use de.jstacs.sequenceScores

Package	Description
de.jstacs.sequenceScores	Provides all SequenceScores, which can be used to score a Sequence, typically using some model assumptions.
de.jstacs.sequenceScores.differentiable
de.jstacs.sequenceScores.differentiable.logistic
de.jstacs.sequenceScores.statisticalModels	Provides all StatisticalModels, which can compute a proper (i.e., normalized) likelihood over the input space of sequences. StatisticalModels can be further differentiated into TrainableStatisticalModels, which can be learned from a single input DataSet, and DifferentiableStatisticalModels, which define a proper likelihood but can also compute gradients like DifferentiableSequenceScores.
de.jstacs.sequenceScores.statisticalModels.differentiable	Provides all DifferentiableStatisticalModels, which can compute the gradient with respect to their parameters for a given input Sequence.
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels	Provides DifferentiableStatisticalModels that are directed graphical models.
de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous	Provides DifferentiableStatisticalModels that are homogeneous, i.e.
de.jstacs.sequenceScores.statisticalModels.differentiable.localMixture
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture	Provides DifferentiableSequenceScores that are mixtures of other DifferentiableSequenceScores.
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif
de.jstacs.sequenceScores.statisticalModels.trainable	Provides all TrainableStatisticalModels, which can be learned from a single DataSet.
de.jstacs.sequenceScores.statisticalModels.trainable.discrete
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.homogeneous
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous	This package contains various inhomogeneous models.
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.shared
de.jstacs.sequenceScores.statisticalModels.trainable.hmm	The package provides all interfaces and classes for a hidden Markov model (HMM).
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models	The package provides different implementations of hidden Markov models based on AbstractHMM.
de.jstacs.sequenceScores.statisticalModels.trainable.mixture	This package is the super package for any mixture model.
de.jstacs.sequenceScores.statisticalModels.trainable.mixture.motif
de.jstacs.utils	This package contains a bundle of useful classes and interfaces like ...

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.differentiable

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.differentiable.logistic

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.differentiable

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels

Class and Description
QuickScanningSequenceScore Interface for SequenceScore that provide additional methods for computing scores of infix sequences and filtering infix sequences.
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.differentiable.localMixture

Class and Description
QuickScanningSequenceScore Interface for SequenceScore that provide additional methods for computing scores of infix sequences and filtering infix sequences.
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.differentiable.mixture

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.discrete

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.discrete.homogeneous

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.shared

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.hmm

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.mixture

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.mixture.motif

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.utils

Class and Description
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.