Uses of Interface
de.jstacs.models.hmm.states.emissions.DifferentiableEmission

Packages that use DifferentiableEmission

de.jstacs.models.hmm.models	The package provides different implementations of hidden Markov models based on AbstractHMM
de.jstacs.models.hmm.states	The package provides all interfaces and classes for states used in hidden Markov models.
de.jstacs.models.hmm.states.emissions
de.jstacs.models.hmm.states.emissions.continuous
de.jstacs.models.hmm.states.emissions.discrete

Uses of DifferentiableEmission in de.jstacs.models.hmm.models

Constructors in de.jstacs.models.hmm.models with parameters of type DifferentiableEmission

DifferentiableHigherOrderHMM(MaxHMMTrainingParameterSet trainingParameterSet, String[] name, int[] emissionIdx, boolean[] forward, DifferentiableEmission[] emission, boolean likelihood, double ess, TransitionElement... te)
This is the main constructor.

Uses of DifferentiableEmission in de.jstacs.models.hmm.states

Constructors in de.jstacs.models.hmm.states with parameters of type DifferentiableEmission

SimpleDifferentiableState(DifferentiableEmission e, String name, boolean forward)
This is the constructor of a SimpleState.

Uses of DifferentiableEmission in de.jstacs.models.hmm.states.emissions

Classes in de.jstacs.models.hmm.states.emissions that implement DifferentiableEmission

class

SilentEmission This class implements a silent emission which is used to create silent states.

Uses of DifferentiableEmission in de.jstacs.models.hmm.states.emissions.continuous

Classes in de.jstacs.models.hmm.states.emissions.continuous that implement DifferentiableEmission

class	GaussianEmission Emission for continuous values following a Gaussian distribution.
class	PluginGaussianEmission Basic Gaussian emission distribution without random initialization of parameters.

Uses of DifferentiableEmission in de.jstacs.models.hmm.states.emissions.discrete

Classes in de.jstacs.models.hmm.states.emissions.discrete that implement DifferentiableEmission

class	AbstractConditionalDiscreteEmission The abstract super class of discrete emissions.
class	DiscreteEmission This class implements a simple discrete emission without any condition.
class	PhyloDiscreteEmission Phylogenetic discrete emission This class uses a phylogenetic tree to describe multidimensional data It implements Felsensteins model for nucleotide substitution (F81)
class	ReferenceSequenceDiscreteEmission This class implements a discrete emission that depends on some ReferenceSequenceAnnotation at a certain reference position.