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Packages that use de.jstacs.algorithms.optimization.termination | |
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de.jstacs.algorithms.optimization | Provides classes for different types of algorithms that are not directly linked to the modelling components of Jstacs: Algorithms on graphs, algorithms for numerical optimization, and a basic alignment algorithm. |
de.jstacs.algorithms.optimization.termination | Provides classes for termination conditions that can be used in algorithms. |
de.jstacs.classifiers.differentiableSequenceScoreBased | Provides the classes for Classifier s that are based on SequenceScore s.It includes a sub-package for discriminative objective functions, namely conditional likelihood and supervised posterior, and a separate sub-package for the parameter priors, that can be used for the supervised posterior. |
de.jstacs.motifDiscovery | This package provides the framework including the interface for any de novo motif discoverer. |
de.jstacs.sequenceScores.statisticalModels.trainable | Provides all TrainableStatisticalModel s, which can
be learned from a single DataSet . |
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous | This package contains various inhomogeneous models. |
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.shared | |
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.training | The package provides all classes used to determine the training algorithm of a hidden Markov model. |
de.jstacs.sequenceScores.statisticalModels.trainable.mixture | This package is the super package for any mixture model. |
de.jstacs.sequenceScores.statisticalModels.trainable.mixture.motif |
Classes in de.jstacs.algorithms.optimization.termination used by de.jstacs.algorithms.optimization | |
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TerminationCondition
This interface can be used in any iterative algorithm for determining the end of the algorithm. |
Classes in de.jstacs.algorithms.optimization.termination used by de.jstacs.classifiers.differentiableSequenceScoreBased | |
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AbstractTerminationCondition
This class is the abstract super class of many TerminationCondition s. |
Classes in de.jstacs.algorithms.optimization.termination used by de.jstacs.motifDiscovery | |
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AbstractTerminationCondition
This class is the abstract super class of many TerminationCondition s. |
Classes in de.jstacs.algorithms.optimization.termination used by de.jstacs.sequenceScores.statisticalModels.trainable | |
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AbstractTerminationCondition
This class is the abstract super class of many TerminationCondition s. |
Classes in de.jstacs.algorithms.optimization.termination used by de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous | |
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TerminationCondition
This interface can be used in any iterative algorithm for determining the end of the algorithm. |
Classes in de.jstacs.algorithms.optimization.termination used by de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.shared | |
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TerminationCondition
This interface can be used in any iterative algorithm for determining the end of the algorithm. |
Classes in de.jstacs.algorithms.optimization.termination used by de.jstacs.sequenceScores.statisticalModels.trainable.hmm.training | |
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AbstractTerminationCondition
This class is the abstract super class of many TerminationCondition s. |
Classes in de.jstacs.algorithms.optimization.termination used by de.jstacs.sequenceScores.statisticalModels.trainable.mixture | |
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TerminationCondition
This interface can be used in any iterative algorithm for determining the end of the algorithm. |
Classes in de.jstacs.algorithms.optimization.termination used by de.jstacs.sequenceScores.statisticalModels.trainable.mixture.motif | |
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TerminationCondition
This interface can be used in any iterative algorithm for determining the end of the algorithm. |
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