Uses of Class
de.jstacs.data.alphabets.DiscreteAlphabet

Packages that use DiscreteAlphabet
de.jstacs.data.alphabets Provides classes for the representation of discrete and continuous alphabets, including a DNAAlphabet for the most common case of DNA-sequences. 
 

Uses of DiscreteAlphabet in de.jstacs.data.alphabets
 

Subclasses of DiscreteAlphabet in de.jstacs.data.alphabets
 class ComplementableDiscreteAlphabet
          This abstract class indicates that an alphabet can be used to compute the complement.
 class DNAAlphabet
          This class implements the discrete alphabet that is used for DNA.
 class GenericComplementableDiscreteAlphabet
          This class implements an generic complementable discrete alphabet.
 class ProteinAlphabet
          This class implements the discrete alphabet that is used for proteins (one letter code).
 

Methods in de.jstacs.data.alphabets that return DiscreteAlphabet
 DiscreteAlphabet DiscreteAlphabetMapping.getNewAlphabet()
          Returns the new Alphabet that is used for mapping.
 

Constructors in de.jstacs.data.alphabets with parameters of type DiscreteAlphabet
DiscreteAlphabetMapping(int[] newValues, DiscreteAlphabet newAlphabet)
          The main constructor creating a DiscreteAlphabetMapping.
 

Constructor parameters in de.jstacs.data.alphabets with type arguments of type DiscreteAlphabet
DiscreteAlphabet.DiscreteAlphabetParameterSet(Class<? extends DiscreteAlphabet> clazz)
          This constructor should only be used for parameter sets that are intended to created subclasses of DiscreteAlphabet.