Uses of Class
de.jstacs.data.alphabets.DiscreteAlphabet

Packages that use DiscreteAlphabet

de.jstacs.data.alphabets

Provides classes for the representation of discrete and continuous alphabets, including a DNAAlphabet for the most common case of DNA-sequences.

Uses of DiscreteAlphabet in de.jstacs.data.alphabets

Subclasses of DiscreteAlphabet in de.jstacs.data.alphabets

class	ComplementableDiscreteAlphabet This abstract class indicates that an alphabet can be used to compute the complement.
class	DNAAlphabet This class implements the discrete alphabet that is used for DNA.
class	GenericComplementableDiscreteAlphabet This class implements an generic complementable discrete alphabet.
class	ProteinAlphabet This class implements the discrete alphabet that is used for proteins (one letter code).

Methods in de.jstacs.data.alphabets that return DiscreteAlphabet

DiscreteAlphabet

DiscreteAlphabetMapping.getNewAlphabet() Returns the new Alphabet that is used for mapping.

Constructors in de.jstacs.data.alphabets with parameters of type DiscreteAlphabet

DiscreteAlphabetMapping(int[] newValues, DiscreteAlphabet newAlphabet)
The main constructor creating a DiscreteAlphabetMapping.

Constructor parameters in de.jstacs.data.alphabets with type arguments of type DiscreteAlphabet

DiscreteAlphabet.DiscreteAlphabetParameterSet(Class<? extends DiscreteAlphabet> clazz)
This constructor should only be used for parameter sets that are intended to created subclasses of DiscreteAlphabet.