Uses of Interface de.jstacs.motifDiscovery.SignificantMotifOccurrencesFinder.JoinMethod

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Uses of Interface
de.jstacs.motifDiscovery.SignificantMotifOccurrencesFinder.JoinMethod

Packages that use SignificantMotifOccurrencesFinder.JoinMethod
de.jstacs.motifDiscovery	This package provides the framework including the interface for any de novo motif discoverer.

Uses of SignificantMotifOccurrencesFinder.JoinMethod in de.jstacs.motifDiscovery

Classes in de.jstacs.motifDiscovery that implement SignificantMotifOccurrencesFinder.JoinMethod
`static class`	`SignificantMotifOccurrencesFinder.SumOfProbabilities` Joins several profiles containing log-probabilities into one profile containing the logarithm of the sum of the probabilities of the single profiles.

Constructors in de.jstacs.motifDiscovery with parameters of type SignificantMotifOccurrencesFinder.JoinMethod
`SignificantMotifOccurrencesFinder(MotifDiscoverer disc, SignificantMotifOccurrencesFinder.JoinMethod joiner, DataSet bg, double[] weights, double sign)` This constructor creates an instance of `SignificantMotifOccurrencesFinder` that uses a `DataSet` to determine the siginificance level.
`SignificantMotifOccurrencesFinder(MotifDiscoverer disc, SignificantMotifOccurrencesFinder.RandomSeqType type, SignificantMotifOccurrencesFinder.JoinMethod joiner, boolean oneHistogram, int numSequences, double sign)` This constructor creates an instance of `SignificantMotifOccurrencesFinder` that uses the given `SignificantMotifOccurrencesFinder.RandomSeqType` to determine the siginificance level.

Constructors in de.jstacs.motifDiscovery with parameters of type SignificantMotifOccurrencesFinder.JoinMethod

SignificantMotifOccurrencesFinder(MotifDiscoverer disc,
                                  SignificantMotifOccurrencesFinder.JoinMethod joiner,
                                  DataSet bg,
                                  double[] weights,
                                  double sign)

This constructor creates an instance of SignificantMotifOccurrencesFinder that uses a DataSet to determine the siginificance level.

SignificantMotifOccurrencesFinder(MotifDiscoverer disc,
                                  SignificantMotifOccurrencesFinder.RandomSeqType type,
                                  SignificantMotifOccurrencesFinder.JoinMethod joiner,
                                  boolean oneHistogram,
                                  int numSequences,
                                  double sign)

This constructor creates an instance of SignificantMotifOccurrencesFinder that uses the given SignificantMotifOccurrencesFinder.RandomSeqType to determine the siginificance level.