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| Packages that use ImageResult | |
|---|---|
| de.jstacs.classifiers | This package provides the framework for any classifier. |
| de.jstacs.classifiers.utils | Provides some useful classes for working with classifiers. |
| de.jstacs.data | Provides classes for the representation of data. The base classes to represent data are Alphabet and AlphabetContainer for representing alphabets,
Sequence and its sub-classes to represent continuous and discrete sequences, and
DataSet to represent data sets comprising a set of sequences. |
| de.jstacs.motifDiscovery | This package provides the framework including the interface for any de novo motif discoverer. |
| de.jstacs.utils.galaxy | |
| Uses of ImageResult in de.jstacs.classifiers |
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| Methods in de.jstacs.classifiers that return ImageResult | |
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static ImageResult |
AbstractScoreBasedClassifier.DoubleTableResult.plot(REnvironment e,
AbstractScoreBasedClassifier.DoubleTableResult... dtr)
This method plots an array of AbstractScoreBasedClassifier.DoubleTableResults in one
image. |
| Uses of ImageResult in de.jstacs.classifiers.utils |
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| Methods in de.jstacs.classifiers.utils that return ImageResult | |
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static ImageResult |
ClassificationVisualizer.getScatterplot(AbstractScoreBasedClassifier cl1,
AbstractScoreBasedClassifier cl2,
DataSet class0,
DataSet class1,
REnvironment e,
boolean drawThreshold)
This method returns an ImageResult containing a scatter plot of
the scores for the given classifiers cl1 and
cl2. |
static ImageResult |
ClassificationVisualizer.plotScores(AbstractScoreBasedClassifier cl,
DataSet class0,
DataSet class1,
REnvironment e,
int bins,
double density,
String plotOptions)
This method returns an ImageResult containing a plot of the
histograms of the scores. |
| Uses of ImageResult in de.jstacs.data |
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| Methods in de.jstacs.data that return ImageResult | |
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static ImageResult |
DinucleotideProperty.getPropertyImage(DataSet original,
DinucleotideProperty prop,
DinucleotideProperty.Smoothing smoothing,
REnvironment re,
int xLeft,
String pltOptions,
int width,
int height)
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static ImageResult |
DinucleotideProperty.getPropertyImage(Sequence original,
DinucleotideProperty prop,
DinucleotideProperty.Smoothing smoothing,
REnvironment re,
int xLeft,
String pltOptions,
int width,
int height)
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| Uses of ImageResult in de.jstacs.motifDiscovery |
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| Methods in de.jstacs.motifDiscovery that return ImageResult | |
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static ImageResult |
MotifDiscovererToolBox.plot(MotifDiscoverer motifDisc,
int component,
int motif,
Sequence sequence,
int startpos,
REnvironment r,
int width,
int height,
MotifDiscoverer.KindOfProfile kind)
This method creates a simple plot of the profile of scores for a sequence and a start position. |
static ImageResult |
MotifDiscovererToolBox.plotAndAnnotate(MotifDiscoverer motifDisc,
int component,
int motif,
Sequence sequence,
int startpos,
REnvironment r,
int width,
int height,
double yMin,
double yMax,
double threshold,
MotifDiscoverer.KindOfProfile kind)
This method creates a plot of the profile of scores for a sequence and a start position and annotates bindings sites in the plot that have a higher score than threshold. |
| Uses of ImageResult in de.jstacs.utils.galaxy |
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| Subclasses of ImageResult in de.jstacs.utils.galaxy | |
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static class |
GalaxyAdaptor.LinkedImageResult
Class for an ImageResult that is linked to a file that can be downloaded. |
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