Uses of Class
de.jstacs.sequenceScores.statisticalModels.trainable.mixture.AbstractMixtureTrainSM

Packages that use AbstractMixtureTrainSM

de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.shared
de.jstacs.sequenceScores.statisticalModels.trainable.mixture	This package is the super package for any mixture model.
de.jstacs.sequenceScores.statisticalModels.trainable.mixture.motif

Uses of AbstractMixtureTrainSM in de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.shared

Subclasses of AbstractMixtureTrainSM in de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.shared

class

SharedStructureMixture This class handles a mixture of models with the same structure that is learned via EM.

Uses of AbstractMixtureTrainSM in de.jstacs.sequenceScores.statisticalModels.trainable.mixture

Subclasses of AbstractMixtureTrainSM in de.jstacs.sequenceScores.statisticalModels.trainable.mixture

class	MixtureTrainSM The class for a mixture model of any TrainableStatisticalModels.
class	StrandTrainSM This model handles sequences that can either lie on the forward strand or on the reverse complementary strand.

Methods in de.jstacs.sequenceScores.statisticalModels.trainable.mixture that return AbstractMixtureTrainSM

AbstractMixtureTrainSM

AbstractMixtureTrainSM.clone()

Uses of AbstractMixtureTrainSM in de.jstacs.sequenceScores.statisticalModels.trainable.mixture.motif

Subclasses of AbstractMixtureTrainSM in de.jstacs.sequenceScores.statisticalModels.trainable.mixture.motif

class	HiddenMotifMixture This is the main class that every generative motif discoverer should implement.
class	ZOOPSTrainSM This class enables the user to search for a single motif in a sequence.