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Packages that use de.jstacs.sequenceScores.differentiable | |
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de.jstacs.classifiers | This package provides the framework for any classifier. |
de.jstacs.classifiers.differentiableSequenceScoreBased | Provides the classes for Classifier s that are based on SequenceScore s.It includes a sub-package for discriminative objective functions, namely conditional likelihood and supervised posterior, and a separate sub-package for the parameter priors, that can be used for the supervised posterior. |
de.jstacs.classifiers.differentiableSequenceScoreBased.gendismix | Provides an implementation of a classifier that allows to train the parameters of a set of
DifferentiableStatisticalModel s by
a unified generative-discriminative learning principle. |
de.jstacs.classifiers.differentiableSequenceScoreBased.logPrior | Provides a general definition of a parameter log-prior and a number of implementations of Laplace and Gaussian priors. |
de.jstacs.classifiers.differentiableSequenceScoreBased.msp | Provides an implementation of a classifier that allows to train the parameters of a set of
DifferentiableStatisticalModel s either
by maximum supervised posterior (MSP) or by maximum conditional likelihood (MCL). |
de.jstacs.motifDiscovery | This package provides the framework including the interface for any de novo motif discoverer. |
de.jstacs.sequenceScores.differentiable | |
de.jstacs.sequenceScores.differentiable.logistic | |
de.jstacs.sequenceScores.statisticalModels.differentiable | Provides all DifferentiableStatisticalModel s, which can compute the gradient with
respect to their parameters for a given input Sequence . |
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels | Provides DifferentiableStatisticalModel s that are directed graphical models. |
de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous | Provides DifferentiableStatisticalModel s that are homogeneous, i.e. |
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture | Provides DifferentiableSequenceScore s that are mixtures of other DifferentiableSequenceScore s. |
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif | |
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models | The package provides different implementations of hidden Markov models based on AbstractHMM . |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.classifiers | |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.classifiers.differentiableSequenceScoreBased | |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.classifiers.differentiableSequenceScoreBased.gendismix | |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.classifiers.differentiableSequenceScoreBased.logPrior | |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.classifiers.differentiableSequenceScoreBased.msp | |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.motifDiscovery | |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.differentiable | |
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AbstractDifferentiableSequenceScore
This class is the main part of any ScoreClassifier . |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
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IndependentProductDiffSS
This class enables the user to model parts of a sequence independent of each other. |
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MultiDimensionalSequenceWrapperDiffSS
This class implements a simple wrapper for multidimensional sequences. |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.differentiable.logistic | |
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AbstractDifferentiableSequenceScore
This class is the main part of any ScoreClassifier . |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable | |
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AbstractDifferentiableSequenceScore
This class is the main part of any ScoreClassifier . |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
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IndependentProductDiffSS
This class enables the user to model parts of a sequence independent of each other. |
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UniformDiffSS
This DifferentiableSequenceScore does nothing. |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels | |
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AbstractDifferentiableSequenceScore
This class is the main part of any ScoreClassifier . |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous | |
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AbstractDifferentiableSequenceScore
This class is the main part of any ScoreClassifier . |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable.mixture | |
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AbstractDifferentiableSequenceScore
This class is the main part of any ScoreClassifier . |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif | |
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AbstractDifferentiableSequenceScore
This class is the main part of any ScoreClassifier . |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.sequenceScores.differentiable used by de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models | |
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DifferentiableSequenceScore
This interface is the main part of any ScoreClassifier . |
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